[Bioperl-l] problem

Somil Sharma somil.sharma1 at gmail.com
Thu Dec 21 01:22:24 EST 2006


hello

*i  run this program*

*#!/use/bin/perl*

*use Bio::DB::GenBank;*

*$gb = new Bio::DB::GenBank;
$seq1 = $gb->get_Seq_by_id('MUSIGHBA1');
print $seq1;
*

*and got this error on cmd line--*

---------- *EXCEPTION  -------------
MSG: WebDBSeqI Request Error:
500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (connect: Unknown error)
Content-Type: text/plain
Client-Date: Thu, 21 Dec 2006 06:28:33 GMT
Client-Warning: Internal response*

*500 Can't connect to eutils.ncbi.nlm.nih.gov:80 (connect: Unknown error)*

*STACK Bio::DB::WebDBSeqI::_request C:/Perl/lib/Bio/DB/WebDBSeqI.pm:685
STACK Bio::DB::WebDBSeqI::get_seq_stream C:/Perl/lib/Bio/DB/WebDBSeqI.pm:491
STACK Bio::DB::WebDBSeqI::get_Stream_by_id
C:/Perl/lib/Bio/DB/WebDBSeqI.pm:27
STACK Bio::DB::WebDBSeqI::get_Seq_by_id C:/Perl/lib/Bio/DB/WebDBSeqI.pm:145
STACK toplevel C:\Perl\a2.pl:5*

plz see if u can help me out.

my ppm is also not able to install Bioperl so i did that also manually.

waiting for ur reply


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