[Bioperl-l] RemoteBlast.pm version 1.28
nagesh.chakka at anu.edu.au
Thu Feb 2 20:23:50 EST 2006
Thanks for the message. The older version of RemoteBlast.pm works on the
logic of checking the temporary file size to determine whether the Blast
results are ready. This condition is not getting satisfied may be due to
some changes brought about by NCBI. I had this problem recently and
figured out that the solution was to use the latest version which has
this problem fixed (does not use file size logic any more) which is not
yet included in the BioPerl package.
Huang Jian wrote:
> Dear Nagesh,
> I have replaced my old RemoteBlast.pm (v 1.17) with v 1.28 you send
> me. Now it works perfectly!!!
> Thank you!!
> ----- Original Message ----- From: "Nagesh Chakka"
> <nagesh.chakka at anu.edu.au>
> To: "Huang Jian" <hjian at kuicr.kyoto-u.ac.jp>; "bioperl-l"
> <bioperl-l at bioperl.org>
> Sent: Friday, February 03, 2006 7:48 AM
> Subject: Re: [Bioperl-l] Sorry, failure in post on the net, so still
> via email
>> Hi Huang,
>> I see that you are submitting a sequence for a remote blast search. Can
>> you check if the RemoteBlast.pm being used is v 1.28 (2005/12/09). If
>> not I have attached it with this email, try to replace it with the old
>> one which has a bug.
>> Let me know if it works.
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