[Bioperl-l] Gibbs sampling algorithm?

Chris Fields cjfields at uiuc.edu
Fri Feb 3 14:34:27 EST 2006

Do you mean this Gibbs program?


You can also request a license from the Gibbs Motif Sampler homepage, which
is more up to date:


Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Sam Al-Droubi
> Sent: Friday, February 03, 2006 12:38 PM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] Gibbs sampling algorithm?
> Hi everyone,
> I am wondering if anyone has implemented the Gibbs sampling algorithm in
> BioPerl or otherwise for finding motifs.  I saw
> Bio::Tools::Run::PiseApplication::gibbs which I believe calls a Gibbs
> program which is not free open source, I think.   I prefer not to write my
> one Gibbs sampling algorithm if it is already out there.  Any comments are
> appreciated.
> Thank you
> Sincerely,
> Sam Al-Droubi, M.S.
> saldroubi at yahoo.com
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