[Bioperl-l] module for finding restriction site in batch of sequences?

Heikki Lehvaslaiho heikki at sanbi.ac.za
Thu Feb 9 23:51:11 EST 2006


It should:

#loop over each seq
    my $ra=Bio::Restriction::Analysis->new(-seq=>$seq1);
    @cuts = $ra->fragments('EcoRI'); # or call some other method

or is it something else you are trying to do?

Yours,
	-Heikki


On Thursday 09 February 2006 22:53, Lalancette, Claudia wrote:
> Greetings,
>
>
>
> I need to find a way to look for a specific restriction enzyme site in
> hundreds of sequences.  Been looking at Bio::Restriction, but not sure
> if will work...  Any suggestions?
>
>
>
> Thanks,
>
> Claudia
>
>
>
>
>
>
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> Bioperl-l at lists.open-bio.org
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     _/  _/  _/  Heikki Lehvaslaiho    heikki at_sanbi _ac _za
    _/_/_/_/_/  Associate Professor    skype: heikki_lehvaslaiho
   _/  _/  _/  SANBI, South African National Bioinformatics Institute
  _/  _/  _/  University of Western Cape, South Africa
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