[Bioperl-l] game xml SeqIO

Robert Buels rmb32 at cornell.edu
Mon Feb 13 17:12:10 EST 2006


Hi all,

Currently, the SeqIO for doing GAME XML does not seem to support writing 
(or reading?) <computational_analysis> elements.  Am I correct?

If I am, are there any plans to add this functionality?  Can I help / do it?

If there are plans to add this, how would one distinguish SeqFeatures 
that should be rendered as <computational_analysis> from SeqFeatures 
that should be rendered as <annotation>?  Would we do that with 
Bio::SeqFeature::Computation?  I assume that a given Seq can have 
SeqFeatures of different types associated with it (I don't know, I'm a 
bioperl newb).

Rob

-- 
Robert Buels
SGN Bioinformatics Analyst
252A Emerson Hall, Cornell University
Ithaca, NY  14853
Tel: 607-255-2360
rmb32 at cornell.edu
http://www.sgn.cornell.edu




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