[Bioperl-l] Matrix Average Code / Module ?

Shameer Khadar shameer at ncbs.res.in
Mon Feb 20 01:21:01 EST 2006


Hi all,
Is there any program/module to calculate the average of a blosum/pam any
matrix ?

I have a matrix and I need to see the average

for example

11 22 43 54 50
27 87 74 32 10
66 58 98 78 20
22 23 44 16 34

I have gone through Bio::Matrix::MatrixI and Bio::Matrix::GenericMatrix
and other perl modules like Math::Matrix
http://search.cpan.org/~ulpfr/Math-Matrix-0.4/Matrix.pm
and Math::Cephes::Matrix - but none of them have a provison to do matrix 
average calculation.

Any help ???
thanks in advance,
Happy biocomputing !!!


-- 
Shameer Khadar
National Centre for Biological Sciences (TIFR)
UAS - GKVK Campus - Bellary Road Bangalore - 65 - Karnataka - India
T - 91-080-23636420-32 EXT 4241
F - 91-080-23636662/23636675
W - http://www.ncbs.res.in
--------------------------------------------------
"Refrain from illusions, insist on work and not words,
 patiently seek divine and scientific truth."
MM




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