[Bioperl-l] seq_word and pattern counts

staffa staffa at niehs.nih.gov
Tue Feb 28 15:01:42 EST 2006


Hello,
Does anyone know if Bio::Tools::SeqWords
count_words
or
count_overlap_words
will do DNA pattern searches and honor ambiguity symbols
like exist in some restriction enzyme pattern definitions,
e.g. GGnnCC


> Thank you.
>
> Nick Staffa
> Telephone: 919-316-4569  (NIEHS: 6-4569)
> Scientific Computing Support Group
> NIEHS Information Technology Support Services Contract
> (Science Task Monitor: Jack L. Field( field1 at niehs.nih.gov )
> National Institute of Environmental Health Sciences
> National Institutes of Health
> Research Triangle Park, North Carolina
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