[Bioperl-l] WGS sequences through Bio::DB::GenBank

Chris Fields cjfields at uiuc.edu
Tue Feb 28 21:41:08 EST 2006


I know that a recent post showed that you could retrieve CONTIG sequences
from GenBank files fairly easily:

http://bioperl.org/pipermail/bioperl-l/2006-February/020891.html

I'm driving myself a bit buggy looking for this, and I may be blind to it,
but can the same be done with WGS files?  I've tried Bio::DB::GenBank and a
few other Bio::DB* modules to see if it's been implemented but haven't had
any luck yet.  I may try getting around it using Bio::DB::Query::GenBank,
but just trying to find a more direct route.

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 




More information about the Bioperl-l mailing list