[Bioperl-l] PPM files for bioperl, bioperl-db

Brian Osborne osborne1 at optonline.net
Thu Jan 5 15:50:22 EST 2006


It looks like IO::Scalar is no longer used, it _was_ used by
Bio::Tools::Blast. HTML::Entities is used by Bio::SearchIO::blastxml.

Brian O.

On 1/5/06 3:27 PM, "Chris Fields" <cjfields at uiuc.edu> wrote:

> I have been toying around with creating PPM archives (Perl 5.8) for
> Activestate Perl on WinXP and managed to get PPMs for bioperl-live and
> bioperl-db installed through PPM3.  I haven't tested them out yet, but I'm
> trying to gauge the interest in maybe making them available for use with
> somewhat regular updates (weekly or monthly).
> Also, the dependencies listed for bioperl included the following:
> DB-File
> File-Spec
> File-Temp 
> IO-String
> HTML-Entities
> IO-Scalar
> All but HTML=Entities and IO-Scalar are available for Win32.  Anyone know
> what the missing modules are used for?
> Christopher Fields
> Postdoctoral Researcher - Switzer Lab
> Dept. of Biochemistry
> University of Illinois Urbana-Champaign
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