[Bioperl-l] BioSQL, bioperl-db and UniGene

Marc Saric marc.saric at gmx.de
Mon Jan 9 10:22:43 EST 2006

First of all, thanks for reading my lenghty mail and thanks for answering.

Sean Davis wrote:

>>First off, you have seen the TIGR RESOURCERER application
>>(http://www.tigr.org/tigr-scripts/magic/r1.pl), right?
> And, since we started out talking about microarrays, are you aware of the
> BioConductor project and their annotation efforts, as well as a connection
> to Resourcerer?



if you are interested in human, mouse or rat (I am currently not).

Yes, I have seen all of that before and some more tools, although I
think I have'nt had the time to really try out everything or dig deeply
into all tools available.

The main point is, that there are some microarray-oligo-sets, which are
not covered by an existing source or would need integration and
crosschecking of results and because I had some experience with a set
(non-zebrafish), which was not covered by any source I could find on the
net, I prefer to do my own annotation, preferably based on the probe

I will have a closer look at the stuff you pointed out to me and write
again to bioperl-l with some more questions in the near future.

Thanks again.


Marc Saric

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