[Bioperl-l] Problem with Webblast.pm

Barry Moore bmoore at genetics.utah.edu
Sun Jan 15 15:36:15 EST 2006


Where did you get run_remote_blast.pl from?  I'm not sure, but I think
that is an older script and I don't think Webblast.pm is part of the
bioperl distribution anymore.  I don't find it on my computer either.
Try using bp_remote_blast.pl which you should find in the scripts
directory of you bioperl installation.  It uses RemoteBlast.pm which is
the current package for doing Blast over the web.


> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org [mailto:bioperl-l-
> bounces at portal.open-bio.org] On Behalf Of Nagesh Chakka
> Sent: Saturday, January 14, 2006 12:37 AM
> To: bioperl-l at bioperl.org
> Cc: Nagesh Chakka; babu.kannappan at anu.edu.au
> Subject: [Bioperl-l] Problem with Webblast.pm
> Hi,
> I am having problem in using the remote blast module of bioperl. I
> installed the latest version of Bioperl (1.5.1) and when I am running
> run_remote_blast.pl I am getting the following error that it can not
> locate
> Webblast.pm module.
> Can't locate Bio/Tools/Blast/Run/Webblast.pm in @INC (@INC
> contains: . .. /home/nagesh/progs/lib/perl5/i686-linux
> /home/nagesh/progs/lib/perl5 /home/nagesh/progs/lib/perl5//i686-linux
> /home/nagesh/progs/lib/perl5/ /usr/local/lib/perl5/5.8.6/i686-linux
> /usr/local/lib/perl5/5.8.6
> /usr/local/lib/perl5/site_perl/5.8.6 /usr/local/lib/perl5/site_perl)
> at /home/nagesh/progs/lib/perl5/Bio/Tools/Blast.pm line 1303, <STDIN>
> 1.
> When I had looked at the directory (Bio/Tools/Blast/Run/), I could not
> find
> this module. The following webpage says that it is available with the
> package.
> Can anyone please advice what would have gone wrong and how can I get
> going? The testing of bioperl installation was ok.
> Hoping for some answer.
> Thanks
> Nagesh
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