[Bioperl-l] bioperl

Dr. Christoph Gille christoph.gille at charite.de
Thu Jan 19 18:36:53 EST 2006


Hi Torsten,

perhaps Sopma is not the best choice as a test case for bringing perl and
java together. It is not a convincing example because people would ask why
not
contacting the server directly from java and why taking the hazzard with
perl installation.

I want to demonstrate that BioPerl programs can well work together with
STRAP/Biojava with the wrapper I am  just developing but I need a suitable
example program.

What I consider is a sophisticated non-interactive Bioperl program that
performs some kind of useful computation on a protein sequence, or an
alignment or a protein 3D structure.

Do you know of something appropriate ?

It does not matter if the program is complex or contains C/C++ as long as
it can be automatically installed without user interaction.


Many thanks

Christoph



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