January 2006 Archives by thread

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Starting: Mon Jan 2 23:40:08 EDT 2006
Ending: Tue Jan 31 14:59:00 EDT 2006
Messages: 213

• [Bioperl-l] Please help with bioperl install WIN   Dr. Dhundy R. Bastola
• [Bioperl-l] loading yeast data failing...   Angshu Kar
  • [Bioperl-l] loading yeast data failing...   Hilmar Lapp
    • [Bioperl-l] loading yeast data failing...   Angshu Kar
      • [Bioperl-l] loading yeast data failing...   Hilmar Lapp
      • [Bioperl-l] loading yeast data failing...   Angshu Kar
      • [Bioperl-l] loading yeast data failing...   Hilmar Lapp
      • [Bioperl-l] loading yeast data failing...   Angshu Kar
      • [Bioperl-l] loading yeast data failing...   Hilmar Lapp
• Fwd: [Bioperl-l] loading yeast data failing...   Hilmar Lapp
• [Bioperl-l] loading yeast data failing...   Barry Moore
• [Bioperl-l] Please help with bioperl install WIN   Barry Moore
• [Bioperl-l] blast output -> blast -m8 output   Jason Stajich
• [Bioperl-l] loading yeast data failing...   Barry Moore
  • [Bioperl-l] loading yeast data failing...   Angshu Kar
  • [Bioperl-l] loading yeast data failing...   chen li
• [Bioperl-l] Re: Test writing   Jason Stajich
• [Bioperl-l] loading yeast data failing...   Marc Logghe
• [Bioperl-l] counting and searching patterns   khoueiry
• [Bioperl-l] Bio::DB::Registry get_all_primary_ids   Daniel Lang
• [Bioperl-l] counting and searching patterns   Marc Logghe
  • [Bioperl-l] counting and searching patterns   khoueiry
• [Bioperl-l] Bio::DB::Registry get_all_primary_ids   Marc Logghe
  • [Bioperl-l] Bio::DB::Registry get_all_primary_ids   Daniel Lang
• [Bioperl-l] bioperl script error   Andreo Beck
  • [Bioperl-l] bioperl script error   Torsten Seemann
    • [Bioperl-l] bioperl script error   Andreo Beck
      • [Bioperl-l] bioperl script error   Jason Stajich
      • [Bioperl-l] bioperl script error   Andreo Beck
      • [Bioperl-l] bioperl script error   Jason Stajich
• [Bioperl-l] matrix from bl2seq   Giovanni Coppola
• [Bioperl-l] bioperl script error   Andreo Beck
• [Bioperl-l] BioSQL, bioperl-db and UniGene   Marc Saric
  • [Bioperl-l] BioSQL, bioperl-db and UniGene   Sean Davis
  • [Bioperl-l] BioSQL, bioperl-db and UniGene   Hilmar Lapp
    • [Bioperl-l] BioSQL, bioperl-db and UniGene   Sean Davis
      • [Bioperl-l] BioSQL, bioperl-db and UniGene   Marc Saric
• [Bioperl-l] PPM files for bioperl, bioperl-db   Chris Fields
  • [Bioperl-l] PPM files for bioperl, bioperl-db   Brian Osborne
    • [Bioperl-l] PPM files for bioperl, bioperl-db   Chris Fields
      • [Bioperl-l] PPM files for bioperl, bioperl-db   Brian Osborne
      • [Bioperl-l] PPM files for bioperl, bioperl-db   Chris Fields
• FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   hz5 at njit.edu
  • FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   Ewan Birney
    • [Bioperl-l] How to extract promoter region seq from genbank or another source?   Sean Davis
    • FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   Stefan Kirov
  • FW: [Bioperl-l] How to extract promoter region seq from genbank or another source?   Sam Al-Droubi
• [Bioperl-l] Can't find gene sequence in choromosome sequence   hz5 at njit.edu
  • [Bioperl-l] Can't find gene sequence in choromosome sequence   Andrew Walsh
    • [Bioperl-l] Can't find gene sequence in choromosome sequence   Sean Davis
• [Bioperl-l] GFF3 aggregation bottom-up   Tobias Straub
• [Bioperl-l] Re: [Gmod-gbrowse] GFF3 aggregation bottom-up   Scott Cain
• [Bioperl-l] Re: [Gmod-gbrowse] GFF3 aggregation bottom-up   Scott Cain
• [Bioperl-l] matrix from bl2seq   kevin.mcmahon at ttuhsc.edu
  • [Bioperl-l] matrix from bl2seq   Giovanni Coppola
• [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
  • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
    • [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
      • [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Steve Chervitz
      • [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
• [Bioperl-l] joining BioPerl and Java   Dr. Christoph Gille
• [Bioperl-l] Re: [Gmod-gbrowse] GFF3 aggregation bottom-up   Tobias Straub
• [Bioperl-l] how to break a while loop   chen li
  • [Bioperl-l] how to break a while loop   Stefan Kirov
• [Bioperl-l] Generalized Suffix Tree in BioPerl?   Edward WIJAYA
• [Bioperl-l] Problem with remote BLAST   Dr. med. Peter Robinson
• [Bioperl-l] Fwd: [Bioperl-guts-l] Can BPLite parse HTML formatted BLAST output   Jason Stajich
• [Bioperl-l] internet proxy   Dr. Christoph Gille
  • [Bioperl-l] internet proxy   Torsten Seemann
    • [Bioperl-l] internet proxy   Dr. Christoph Gille
• [Bioperl-l] Problem with Graphics   Iain Wallace
• [Bioperl-l] Biophp.org released   Joseba Bikandi
• [Bioperl-l] blast output -> blast -m8 output   Amir Karger
• [Bioperl-l] Patch for GFF.pm for BioPerl 1.5.1   Scott Cain
• [Bioperl-l] Current Version on Web Site?   Ryan Golhar
• [Bioperl-l] Current Version on Web Site?   Barry Moore
  • [Bioperl-l] Current Version on Web Site?   Scott Cain
• [Bioperl-l] remoteblast   Hubert Prielinger
• [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Hubert Prielinger
  • [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Jason Stajich
• [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
  • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
    • [Bioperl-l] error running load_seqdatabase.pl   Chris Fields
• [Bioperl-l] Re: problem in /usr/lib/perl5/site_perl/5.8.6/Bio/SearchIO/blast.pm   Jason Stajich
• [Bioperl-l] Re: problem in /usr/lib/perl5/site_perl/5.8.6/Bio/SearchIO/blast.pm   Jason Stajich
• [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
• [Bioperl-l] Problem with Webblast.pm   Nagesh Chakka
• [Bioperl-l] BIO::SearchIO HOWTO mistake?   Anders Stegmann
  • [Bioperl-l] BIO::SearchIO HOWTO mistake?   Jason Stajich
• [Bioperl-l] parser for primer3 output   chen li
  • [Bioperl-l] parser for primer3 output   Jason Stajich
• [Bioperl-l] Problem with Webblast.pm   Barry Moore
• [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Hubert Prielinger
  • [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Brian Osborne
• [Bioperl-l] Trouble using RemoteBlast.pm   Nagesh Chakka
  • [Bioperl-l] Trouble using RemoteBlast.pm   Hubert Prielinger
• [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Hubert Prielinger
• Fwd: [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Jason Stajich
  • Fwd: [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Hubert Prielinger
  • Fwd: [Bioperl-l] parse Blast Output and Composition Based Statistics parameter   Hubert Prielinger
• [Bioperl-l] concatenate two embl sequence files   jan aerts (RI)
  • [Bioperl-l] concatenate two embl sequence files   Heikki Lehvaslaiho
• [Bioperl-l] Context-sensitive alignment parameters   Jay Moore
  • [Bioperl-l] Context-sensitive alignment parameters   David Messina
  • [Bioperl-l] Context-sensitive alignment parameters   Jason Stajich
• [Bioperl-l] Trouble using RemoteBlast.pm   Barry Moore
  • [Bioperl-l] Trouble using RemoteBlast.pm   Nagesh Chakka
  • [Bioperl-l] Trouble using RemoteBlast.pm   Keith Boroevich
  • [Bioperl-l] Trouble using RemoteBlast.pm   Keith Boroevich
    • [Bioperl-l] Trouble using RemoteBlast.pm   Chris Fields
      • [Bioperl-l] Trouble using RemoteBlast.pm   Jason Stajich
• [Bioperl-l] parse Blast Output and Composition Based Statisticsparameter   Barry Moore
  • [Bioperl-l] parse Blast Output and Composition Based Statisticsparameter   Hubert Prielinger
• [Bioperl-l] Trouble using RemoteBlast.pm   Barry Moore
  • [Bioperl-l] Trouble using RemoteBlast.pm   Nagesh
    • [Bioperl-l] Trouble using RemoteBlast.pm   Barry Moore
      • [Bioperl-l] RemoteBlast.pm problem resolved!!!!!   Nagesh
      • [Bioperl-l] RemoteBlast.pm problem resolved!!!!!   Chris Fields
• [Bioperl-l] bioperl-db working (for the moment) on Win32   Chris Fields
• [Bioperl-l] bioperl-db working (for the moment) on Win32   Barry Moore
  • [Bioperl-l] bioperl-db working (for the moment) on Win32   Hilmar Lapp
    • [Bioperl-l] bioperl-db working (for the moment) on Win32   Chris Fields
      • [Bioperl-l] bioperl-db working (for the moment) on Win32   Hilmar Lapp
• [Bioperl-l] GMOD PPM repository not working   Chris Fields
  • [Bioperl-l] Re: [Gmod-gbrowse] GMOD PPM repository not working   Scott Cain
    • [Bioperl-l] [Gmod-gbrowse] GMOD PPM repository not working   Chris Fields
      • [Bioperl-l] [Gmod-gbrowse] GMOD PPM repository not working   Scott Cain
• [Bioperl-l] XML output from RemoteBlast   Chris Fields
• [Bioperl-l] Re: volunteers needed   supratim mukherjee
  • [Bioperl-l] Re: volunteers needed   Brian Osborne
• [Bioperl-l] Bio::Taxonomy::{Tree&Node} testing   Heikki Lehvaslaiho
• [Bioperl-l] SVG treefile problem   Amanda O'Reilly
• [Bioperl-l] Calculating a bunch of SNPs   Amir Karger
  • [Bioperl-l] Calculating a bunch of SNPs   Albert Vilella
• [Bioperl-l] XML output from RemoteBlast   Chris Fields
• [Bioperl-l] problem with Primer3: too many files open   Andy Nunberg
  • [Bioperl-l] problem with Primer3: too many files open   Brian Osborne
• [Bioperl-l] XML output from RemoteBlast   Chris Fields
• [Bioperl-l] OntologyTerm::as_text   Hilmar Lapp
• [Bioperl-l] search2gff   Hilmar Lapp
• [Bioperl-l] search2gff   Hilmar Lapp
• [Bioperl-l] bioperl   Dr. Christoph Gille
  • [Bioperl-l] bioperl   Jason Stajich
• [Bioperl-l] 1 small help with WU-BLAST -postsw   Angshu Kar
  • [Bioperl-l] 1 small help with WU-BLAST -postsw   Jason Stajich
    • [Bioperl-l] 1 small help with WU-BLAST -postsw   Angshu Kar
      • [Bioperl-l] 1 small help with WU-BLAST -postsw   Jason Stajich
• [Bioperl-l] wrong nomatch position from protein with singly deleted Aa   Anders Stegmann
  • [Bioperl-l] wrong nomatch position from protein with singly deleted Aa   Jason Stajich
    • [Bioperl-l] wrong nomatch position from protein with singly deleted Aa   Anders Stegmann
• [Bioperl-l] BioPerl Physical Map modules, tests needed   Heikki Lehvaslaiho
• [Bioperl-l] 2 questions about Bio::Tools::WebBlat   Phil-
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
  • [Bioperl-l] formatdb with the nr database   Scott Markel
  • [Bioperl-l] formatdb with the nr database   Tim Erwin
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
  • [Bioperl-l] formatdb with the nr database   Scott Markel
    • [Bioperl-l] formatdb with the nr database   Hubert Prielinger
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
  • [Bioperl-l] formatdb with the nr database   Nagesh Chakka
  • [Bioperl-l] formatdb with the nr database   Scott Markel
    • [Bioperl-l] formatdb with the nr database   Hubert Prielinger
      • [Bioperl-l] formatdb with the nr database   Scott Markel
• [Bioperl-l] .tab + FASTA -> EMBL   Milo Thurston
• RE [Gmod-gbrowse] [Fwd: [Bioperl-l] search2gff]   Scott Cain
• [Bioperl-l] RemoteBlast.pm and Bio::SearchIO::blast.pm - partially resolved   Chris Fields
  • [Bioperl-l] Re: RemoteBlast.pm and Bio::SearchIO::blast.pm - partially resolved   Jason Stajich
    • [Bioperl-l] RE: RemoteBlast.pm and Bio::SearchIO::blast.pm - partially resolved   Chris Fields
    • [Bioperl-l] RemoteBlast.pm and Bio::SearchIO::blast.pm -partially resolved   Chris Fields
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
• [Bioperl-l] formatdb with the nr database   Hubert Prielinger
• [Bioperl-l] new mailing list server   Jason Stajich
• [Bioperl-l] new website launched   Jason Stajich
  • [Bioperl-l] new website launched   Heikki Lehvaslaiho
  • [Bioperl-l] new website launched   William Hsiao
    • [Bioperl-l] new website launched   Jason Stajich
  • [Bioperl-l] new website launched   William Hsiao
• [Bioperl-l] concatenate two embl sequence files   Roy Chaudhuri
  • [Bioperl-l] concatenate two embl sequence files   Heikki Lehvaslaiho
    • [Bioperl-l] concatenate two embl sequence files   Roy Chaudhuri
      • [Bioperl-l] concatenate two embl sequence files   Heikki Lehvaslaiho
      • [Bioperl-l] concatenate two embl sequence files   Roy Chaudhuri
• [Bioperl-l] bioperl-db on Windows (update)   Chris Fields
  • [Bioperl-l] bioperl-db on Windows (update)   Hilmar Lapp
• [Bioperl-l] bioperl installation problems with External Modules - doesn't see installed modules   s.rayner at att.net
• [Bioperl-l] Fwd: some doubts in bioperl   Heikki Lehvaslaiho
• [Bioperl-l] [GUSDEV] Another error executing ISF   Ricardo Balbi
  • [Bioperl-l] [GUSDEV] Another error executing ISF   Jason Stajich
  • [Bioperl-l] [GUSDEV] Another error executing ISF   chris mungall
    • [Bioperl-l] [GUSDEV] Another error executing ISF   Alberto M. R. Dávila
• [Bioperl-l] How to search Bioperl-l archives   Paul G Cantalupo
  • [Bioperl-l] How to search Bioperl-l archives   Jason Stajich
  • [Bioperl-l] How to search Bioperl-l archives   Chris Fields
• [Bioperl-l] BioPHP.org - open source repository of code and scripts   Joseba Bikandi
• [Bioperl-l] Requesting your issues with Module:Bio::Tools::Run::RemoteBlast   Roger Hall
  • [Bioperl-l] Requesting your issues withModule:Bio::Tools::Run::RemoteBlast   Chris Fields
• [Bioperl-l] RNAMotif parser   Chris Fields
  • [Bioperl-l] RNAMotif parser   Torsten Seemann
    • [Bioperl-l] RNAMotif parser   Chris Fields
      • [Bioperl-l] RNAMotif parser   Torsten Seemann
      • [Bioperl-l] RNAMotif parser   Jason Stajich
• [Bioperl-l] Parsing clustalw alignments   Ryan Golhar
  • [Bioperl-l] Parsing clustalw alignments   Chris Fields
  • [Bioperl-l] Parsing clustalw alignments   Jason Stajich
    • [Bioperl-l] Parsing clustalw alignments   Ryan Golhar
• [Bioperl-l] Bio::Graphics: Different glyphs on same track   Andy Lindeman
• [Bioperl-l] Bio::Graphics: Different glyphs on same track   Marc Logghe
  • [Bioperl-l] Bio::Graphics: Different glyphs on same track   Andy Lindeman

Last message date: Tue Jan 31 14:59:00 EDT 2006
Archived on: Tue Jan 31 15:06:33 EDT 2006

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