[Bioperl-l] Bio::AlignIO::metafasta tests

Chris Fields cjfields at uiuc.edu
Fri Jun 2 15:13:31 EDT 2006


Heikki,

I uncovered a weird bug concerning Bio::AlignIO::metafasta which popped up
when running AlignIO.t (I was fixing bug 2000):

http://bugzilla.open-bio.org/show_bug.cgi?id=2016

Not sure what's going on there but using read_aln and write_aln seem to work
normally.  It may have something to do with Bio::SimpleAlign but I'm not
absolutely sure.

Any ideas what may be going on here?

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 




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