[Bioperl-l] remoteblast xml problem

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Sat Jun 3 19:54:20 EDT 2006


Hubert,

> another question for parsing the xml output....is there a xml parser 
> available for blast xml output or how to start.....
> I have looked up at the wikiperl and cpan Bio::SearchIO::blastxml, but 
> I'm not sure how to start....sorry, I guess I'm too stupid....
> is their maybe another introduction or an example.

I think we already answered this question for you on 20 May 2006:

http://bioperl.org/pipermail/bioperl-l/2006-May/021574.html
http://www.bioperl.org/wiki/ListSummary:May_10-31%2C2006#How_to_parse_BLAST_XML_output

http://www.bioperl.org/wiki/HOWTO:SearchIO (search for "blastxml")

--Torsten Seemann



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