[Bioperl-l] Bio::AlignIO::metafasta tests

Sendu Bala sb at mrc-dunn.cam.ac.uk
Tue Jun 6 05:17:48 EDT 2006


Chris Fields wrote:
> Heikki,
> 
> I uncovered a weird bug concerning Bio::AlignIO::metafasta which popped up
> when running AlignIO.t (I was fixing bug 2000):
> 
> http://bugzilla.open-bio.org/show_bug.cgi?id=2016
> 
> Not sure what's going on there but using read_aln and write_aln seem to work
> normally.  It may have something to do with Bio::SimpleAlign but I'm not
> absolutely sure.
> 
> Any ideas what may be going on here?

Yes, see my replies on the bug page. But so more people see the 
question, I'll ask here: can anyone offer examples of metafasta files, 
especially multiple alignments?


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