[Bioperl-l] Anyone have a "Lasergene" example sequence file?

Fernan Aguero fernan at iib.unsam.edu.ar
Thu Jun 8 13:02:27 EDT 2006


+----[ Torsten Seemann <torsten.seemann at infotech.monash.edu.au> (08.Jun.2006 13:47):
|
| Hi all,
| 
| I've just been further auditing the Bioperl code and noticed that
| Bio::SeqIO::lasergene didn't even compile (now fixed) but I still
| can't locate an example/sample sequence file in "Lasergene" format.
| 
|  From the code it looks similar to 'raw' format but has "^^" as
| a separator character.
| 
| Can anyone provide a real-life example so I can augment the 
| t/lasergene.t tests?
|
+----]

See the attached file. 

The format seems to be plain text, beginning with a free
text description that goes from the beginning of the file
until the "^^" delimiter, and after that the sequence.

Fernan
-------------- next part --------------
Created: Jueves, 08 de Junio de 2006 01:56 p.m.

This is a test sequence created with EditSeq (Lasergene's DNAStar)

^^
ATCGATCGATCG


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