[Bioperl-l] fink and updating bioperl

Thomas J Keller kellert at ohsu.edu
Thu Jun 8 20:29:10 EDT 2006


Greetings,
Is fink still a reasonable way to install and maintain bioperl?  
(There's been some emails about instability.) How 'bout upgrades: the  
way I have fink installed it's path is first when perl reads @INC. So  
if I put a newer Bio::something in /usr/local/whereever it won't be  
seen if an older module is in the fink path.  Can I upgrade in the  
fink "space" without messing up fink's database? Other options?

Thanks,
Tom K


Tom Keller, Ph.D.
kellert at ohsu.edu
503-494-2442
6339b Basic Science Bldg
http://www.ohsu.edu/research/core





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