[Bioperl-l] For CVS developers-potentialpitfall with "return undef"

Scott Cain cain at cshl.edu
Wed Jun 7 19:02:43 EDT 2006


On Wed, 2006-06-07 at 17:26 -0500, David Messina wrote:
> 
> 
> Failures in 5/12 version of bioperl-live but NOT in today's version
> ===================================================================
> - OntologyStore.t -
> Neither OntologyStore.t or Bio/Ontology/OntologyStore.pm have been  
> touched between 5/12 and today.
> 
> The error looks like a transient network problem to me, but I'm not  
> sure:
> -------------------- WARNING ---------------------
> MSG: [1/5] tried to fetch http://cvs.sourceforge.net/viewcvs.py/ 
> *checkout*/song/ontology/so.definition?rev=HEAD, but server threw  
> 500.  retrying...
> ---------------------------------------------------
> [REPEATED 5 times -Dave]
> 
> t/OntologyStore..............FAILED tests 3-6
>          Failed 4/6 tests, 33.33% okay
> 
That is a problem with the cvs server at SourceForge (where the Sequence
Ontology is hosted).  I changed the module that tries to get that file
(I don't remember off hand what it was).  

Scott

-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.edu
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory
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