bernd.web at gmail.com
Fri Jun 9 09:23:21 EDT 2006
Two queries with respect to SimpleAlign. I am using the following code
based on the POD.
my $in = Bio::AlignIO->newFh(-file => $file, -format => 'fasta');
my $out = Bio::AlignIO->newFh('-format' => 'clustalw');
print $out $_ while <$in>;
1) is it possible to set set_displayname_flat() globally without doing
$_->set_displayname_flat() per alignment.
2) My input files have an ID and description line for each seq in the
alignment. When the file is converted I loose the description line. I
know I can get the description of the sequences (e.g.
How could I export the complete fasta defline including the
description (I realize that general clustal format has a limit on the
number of characters, but still).
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