[Bioperl-l] Parsing BLAST 2.2.14 output

Susan J. Miller sjmiller at email.arizona.edu
Thu Jun 15 13:42:52 EDT 2006


We are unable to parse BLAST 2.2.14 results from the NCBI website using 
SearchIO.  I have updated Bio::SearchIO::blast.pm to what's in 
bioperl-live, but when users download either plain text or HTML blast 
outputs from the NCBI page, SearchIO cannot parse them.  This used to 
work prior to BLAST 2.2.14.  Should I try installing the entire 
bioperl-live distribution?  (We are running Solaris 8 and perl 5.8 if 
that makes any difference.)

Thanks,
-susan

Susan J. Miller
Biotechnology Computing Facility
Arizona Research Laboratories
Bio West 228
University of Arizona
Tucson, AZ  85721
(520) 626-2597


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