[Bioperl-l] doc.bioperl

Chris Fields cjfields at uiuc.edu
Mon Jun 19 10:38:01 EDT 2006


This has been reported as a bug:

http://bugzilla.open-bio.org/show_bug.cgi?id=1926

Jason mentions in the bug report that the POD may contain something that
messes with the way PDOC deals with code so should be rewritten.

Chris

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Bernd Web
> Sent: Monday, June 19, 2006 5:17 AM
> To: bioperl-l at lists.open-bio.org
> Subject: [Bioperl-l] doc.bioperl
> 
> Hi,
> 
> I just noted that it can happen that the pages at doc.bioperl.org
> state "No synopsis" whereas there is one in the PM file (use perldoc
> or the CVS).
> An example:
> 
> http://doc.bioperl.org/releases/bioperl-current/bioperl-
> live/Bio/DB/Fasta.html
> No synopsis, No description, but
> 
> http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/bioperl-
> live/Bio/DB/Fasta.pm?rev=1.43&content-type=text/vnd.viewcvs-markup
> 
> shows both.
> 
> So, if you're looking for documentation don't forget to do e.g.
> "perldoc Bio::DB::Fasta"
> 
> regards,
> bernd
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