[Bioperl-l] Error message

George Tzotzos G.Tzotzos at unido.org
Tue Jun 20 05:18:48 EDT 2006


I'm a BioPerl novice. I used CPAN to install BioPerl and run the  
following script to test the installation:

use Bio::Perl;
use strict;
use warnings;

my $seq_object = get_sequence('swissprot', "P09651");

write_sequence(">roa1.fasta", 'fasta', $seq_object);

I used as argument both "ROA1_HUMAN" and "P09651". In both cases I  
get the message below.

Any help on the nature of the problem and how to overcome it would be  
greatly appreciated.

Thanks

George


------------- EXCEPTION  -------------
MSG: swissprot stream with no ID. Not swissprot in my book
STACK Bio::SeqIO::swiss::next_seq /Library/Perl/5.8.6/Bio/SeqIO/ 
swiss.pm:179
STACK Bio::DB::WebDBSeqI::get_Seq_by_id /Library/Perl/5.8.6/Bio/DB/ 
WebDBSeqI.pm:153
STACK Bio::Perl::get_sequence /Library/Perl/5.8.6/Bio/Perl.pm:513
STACK toplevel tut2.pl:5





George T. Tzotzos Ph.D

Wagramerstrasse 5
A-1400 Vienna
Austria

Email: g.tzotzos at unido.org





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