[Bioperl-l] Bio::Tools::Run::Alignment::ClustalW output redirect?

Ryan Golhar golharam at umdnj.edu
Sat Jun 24 18:37:15 EDT 2006


I'm using Bio::Tools::Run::Alignment::ClustalW to generate some
alignments and parsing the resulting alignments.

The ClustalW output is being sent to STDOUT.  Is there a way I can
redirect the output to STDERR instead?

Here's how I'm using it:

my $aln_factory = Bio::Tools::Run::Alignment::Clustalw->new();
my $aa_aln = $aln_factory->align(\@aa_seq);

(Forgive me if it in the docs - I've been coding for a week straight now
including saturday)

Thanks, Ryan



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