[Bioperl-l] Bio::SearchIO::hmmer hsp behaviour

Jason Stajich jason at bioperl.org
Thu Jun 29 14:04:12 EDT 2006


however you want - the idea of listeners at the time was to make it  
more SAX like so we could throw away events we didn't want and speed  
up the whole system when there was some idea of how you wanted the  
data filtered.  That may have been too much wishful thinking and I  
just couldn't do it alone.


On Jun 29, 2006, at 3:54 AM, Sendu Bala wrote:

> Jason Stajich wrote:
>>
>> Feel free to propose an alternative implement for parser as you see
>> fit as long as the API is preserved.  you can contibute a new
>> SearchIO plugin and HMMERSearchResultListener to deal with it - or  
>> [snip]
>
> What's the thinking behind the way SearchIOs work? Is it necessary or
> desirable to always do it with events and listeners? Or is it  
> enough to
> simply return a ResultI regardless of how you made it?
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12




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