[Bioperl-l] Bio::Tools::Run::* extending

Brian Osborne osborne1 at optonline.net
Thu Mar 2 09:27:02 EST 2006


For canonical approaches I'd start by looking at modules that Jason's
written, Bio::Tools::Run::Phylo::Molphy::ProtML for example, but not limited
to that example since there's plenty of variation possible.

Brian O.

On 3/2/06 3:53 AM, "Rutger Vos" <rvosa at sfu.ca> wrote:

> Hi all,
> I'd like to write some more Bio::Tools::Run::* wrappers, so I'm
> wondering what the canonical approach is. Which libraries *should* I
> look at (as examples of the bioperl received wisdom and coding
> standards) and which ones *shouldn't* I look at? I'm thinking that paup,
> mrbayes and modeltest need wrappers.
> Thanks!
> Rutger

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