[Bioperl-l] (no subject)

Jason Stajich jason at bioperl.org
Thu Mar 2 09:22:08 EST 2006

you can just send your msg to the mailing list rather than emailing  
people who have contributed.

Try seqboot from PHYLIP and read the instructions in the PHYLIP package.

BioPerl isn't really a phylogenetics package, it is more focused on  
manipulating the alignment and tree data that goes in and comes out  
from these programs

On Mar 2, 2006, at 12:31 AM, Praveen Raj wrote:

> Dear Sir,
>           I am Praveen Raj, doing a project as a part
> of my Master degree(Bioinformatics) at
> National Institute of Virology(Virus Research Centre
> of Govt. of India).
> Sir, I have one question in BioPerl. I have generated
> a Phylogeney tree object from a Clustalw alignment
> object(SimpleAlign) using the method 'make_tree()' of
> 'Bio::Tree::DistanceFactory'.
> The tree is successfull and I have generated the image
> also.
> Sir, Now the problem is , I want to generate a
> boot-strapped tree from the SimpleAlign
> object.If the tree is boot-strapped, it is easy to
> measure the reliability of the tree.
> Sir, How can I generate such a tree with bootstapping
> values in the node?
> Hope you u got the problem.
> Sir, I am waiting for a great advice from you.
>                    Thanking you,
>                      Praveen Raj,
>                      roject Student,
>                      National Institute of Virology,
>                      Pune, INDIA.
> __________________________________________________________
> Yahoo! India Matrimony: Find your partner now. Go to http:// 
> yahoo.shaadi.com

Jason Stajich
Duke University

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