[Bioperl-l] Substitution models

Rutger Vos rvosa at sfu.ca
Fri Mar 3 02:10:36 EST 2006

Hi all,

unless I've missed it, there doesn't seem to be an object for nucleotide 
substitution models. I'd like to implement one. I've attached an example 
implementation (which needs further methods, tests and pod, obviously). 
I'd like to solicit the input of the bioperl-architecture gurus on 
whether the general design of this sample is sane.

The idea is that you would use this to serialize model descriptions 
between e.g. MrBayes and Paup (which describe the same concepts, but 
with slightly different syntax).

Best wishes,


Rutger Vos, PhD. candidate
Department of Biological Sciences
Simon Fraser University
8888 University Drive
Burnaby, BC, V5A1S6
Phone: 604-291-5625 
Fax: 604-291-3496
Personal site: http://www.sfu.ca/~rvosa
FAB* lab: http://www.sfu.ca/~fabstar
Bio::Phylo: http://search.cpan.org/~rvosa/Bio-Phylo/

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