[Bioperl-l] where to document dependency? AND new SeqIO formats: Bio::SeqIO::strider and Bio::SeqIO::lasergene
MEC at stowers-institute.org
Mon Mar 20 18:07:06 EST 2006
Convert::Binary::C is now used by new Bio::SeqIO::strider module. I've
added this to bioperl's ./MakeFile.PL and ./INSTALL. Methinks it could
be added to Bundle::BioPerl. Would you like to do that?
>From: Chris Fields [mailto:cjfields at uiuc.edu]
>Sent: Friday, March 10, 2006 4:59 PM
>To: Cook, Malcolm; 'Brian Osborne'; bioperl-l at lists.open-bio.org
>Subject: RE: [Bioperl-l] where to document dependency? AND new
>SeqIO formats: Bio::SeqIO::strider and Bio::SeqIO::lasergene
>> -----Original Message-----
>> From: Cook, Malcolm [mailto:MEC at stowers-institute.org]
>> Sent: Friday, March 10, 2006 4:38 PM
>> To: Chris Fields; Brian Osborne; bioperl-l at lists.open-bio.org
>> Subject: RE: [Bioperl-l] where to document dependency? AND new SeqIO
>> formats: Bio::SeqIO::strider and Bio::SeqIO::lasergene
>> Getting closer...
>> So, I added it to the ./Makefile.PL and ./INSTALL with the
>> 'added dependency on Convert::Binary::C needed by
>> But, re the wiki, it looks to me like the contents of the
>wiki page are
>> (nearly) identical to the ./INSTALL. Is one autogenerated from the
>> other, or do the both get editted?
>No, at least not at the moment. I suppose we could get it
>into POD and use
>> Also, the only place I can think to add the dependency in the wiki
>> content is to the list of modules installed by Bundle::CPAN. Am I
>> missing something, or should I be considering adding
>> to Bundle::CPAN as well?
>That's the place, though I think you mean Bundle::Bioperl.
>I'm not sure what you should do about including it with
>Looks like Chris Dagdigian is the maintainer for that; his
>email listed on
>CPAN is dag at sonsorol.org, though I wouldn't be surprised if
>it's out of
>Postdoctoral Researcher - Switzer Lab
>Dept. of Biochemistry
>University of Illinois Urbana-Champaign
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