[Bioperl-l] Random access to subsequences using OBDA or bio::db::flat

Sean Davis sdavis2 at mail.nih.gov
Wed Mar 22 08:28:29 EST 2006


I have a pretty straightforward question.  Is it possible to use
bio::db::flat indexed file access to get subsequences quickly (like
chr1:100000-100100) like bio::index::fasta, or do I need to use
bio::index::fasta for that kind of access?  I didn't see any specific
mention of it in the docs, so I doubt it is possible, but just wanted to
make sure.

Thanks,
Sean



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