[Bioperl-l] AlignIO::stockholm write_aln()
cjfields at uiuc.edu
Mon Nov 6 11:35:52 EST 2006
I have added some experimental write_aln() support for Stockholm
format to CVS along with some basic tests to AlignIO.t. I plan on
cleaning it up a bit and adding more tests, along with possibly
adding a builder option (similar to SeqIO::genbank) to have
annotation parsing optional. Right now it is always on by default.
It doesn't print meta data yet but does parse and store it; I'll
probably add that in the next day or two.
Be forewarned if testing this: I haven't tried clustal/msf/etc-
>stockholm conversions yet so don't know if that works, but it
should (it just won't print annotations). I'll add tests for that
when I get time.
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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