[Bioperl-l] Blast Writer

Bernd Web bernd.web at gmail.com
Thu Nov 9 18:07:48 EST 2006


I am using Bio::SearchIO and Bio::SearchIO::Writer::HTMLResultWriter
and its filter, as
my $writer = new Bio::SearchIO::Writer::HTMLResultWriter();
$writer->filter('hsp', \&hsp_filter);

Can I change  the contents of the HSP objects (apart from true/false filtering)?
I would like to change some HSP values. Would it be possible to do so
with HTMLResultWriter's filters? And if so, how to access the Hit/HSP
objects in the filter?

I'd be grateful for any suggestions.

Best regards,

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