[Bioperl-l] Bio::SeqIO::fasta patch.

JK (Jesper Agerbo Krogh) JK at novozymes.com
Fri Nov 10 07:41:19 EST 2006


Hi. 

Just a small patch for outputting stuff on the descriptionline i fasta format. 

Stuff like:

DE test
DE test2
DE test3

converted to fasta becomes:

> testtest2test3 

and not

> test test2 test3

Index: fasta.pm
===================================================================
RCS file: /home/repository/bioperl/bioperl-live/Bio/SeqIO/fasta.pm,v
retrieving revision 1.60
diff -r1.60 fasta.pm
203c203
<                       $desc =~ s/\n//g;
---
>                       $desc =~ s/\n/ /g;


Should probably be applied to the stable-branch .

Jesper



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