[Bioperl-l] Bio::SeqIO::fasta patch.

Chris Fields cjfields at uiuc.edu
Fri Nov 10 11:11:17 EST 2006


On Nov 10, 2006, at 6:41 AM, JK ((Jesper Agerbo Krogh)) wrote:

> Hi.
>
> Just a small patch for outputting stuff on the descriptionline i  
> fasta format.
>
> Stuff like:
>
> DE test
> DE test2
> DE test3
>
> converted to fasta becomes:
>
>> testtest2test3
>
> and not
>
>> test test2 test3
...

Actually, this should be fixed in the original input parser, not in  
fasta.pm.  Was this from EMBL format?

Chris

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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