[Bioperl-l] Bio::DB::Fasta index

Lincoln Stein lincoln.stein at gmail.com
Mon Nov 13 12:43:50 EST 2006


You can always remove write permissions from the index file, in which case
the attempted reindexing will fail quickly.

Lincoln

On 11/11/06, Bernd Web <bernd.web at gmail.com> wrote:
>
> Hi,
>
> A maybe strange question: is it possible to force Bio::DB::Fasta NOT
> to index the fasta file at any time (if there is already an index)? In
> the doc (
> http://doc.bioperl.org/releases/bioperl-current/bioperl-live/Bio/DB/Fasta.html
> ),
> I read: " If one of the source fasta files is updated, the module
> reindexes just that one file. (You can also force reindexing
> manually)."
>
> Can I also switch off reindexing? (I realize that with
> Bio::Index::Fasta indexing can be separated).
>
> bernd
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>



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Lincoln D. Stein
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