[Bioperl-l] Help needed urgently

Sayali sayali_salodkar at persistent.co.in
Wed Nov 15 09:15:52 EST 2006

I wish to fetch consensus sequence and the names of the trace (chromat)
files used in the assembly from the .ace file

For this purpose, I am using Bio::Assembly::IO. But I am unable to find the
appropriate methods which would enable me to fetch this information.



The BS line (base segment) in the .ace file indicates which read phrap has
chosen to be the consensus at a particular position.

For example: 

BS 1 515 K26-572c gives 

BS <padded start consensus position> <padded end consensus position> <read
name> respectively.


How do I retrieve this information contig wise?

Kindly help.


Sayali D Salodkar

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