[Bioperl-l] indexing with several processors

Rutger Vos rvosa at sfu.ca
Thu Nov 16 02:19:43 EST 2006


I notice nobody has responded yet. Without looking at the code I'm 
guessing here, but I would be very surprised if any part of bioperl is 
smart enough to be able to switch to some kind of mpi architecture, or 
any other clever way of parallelizing tasks on multi-processor 
architectures. If you can split the job up by hand and start scripts on 
the chunks, that might work.

Good luck,

Rutger

guillermo wrote:
> Hello,
>
> While using the Bio::Index::GenBank module for indexing Genbank, is 
> there any option to run the process with more than one processor.
>
> Thanks
>
>
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 Rutger A. Vos
 Postdoctoral research fellow
 University of British Columbia
 Personal site: http://www.sfu.ca/~rvosa
        CIPRES: http://www.phylo.org
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