[Bioperl-l] reverse complement - and features
roy at colibase.bham.ac.uk
Thu Nov 16 08:18:55 EST 2006
> do you know of an easy way to reverse complement the sequence of an
> embl entry and the features associated with that sequence.
> I'm looking at genomic syntenic regions, and in some organisms the
> gene is in the plus strand while in others is in the minus.
Try the revcom_with_features method from Bio::SeqUtils:
(Apparently the documentation isn't correct for this. I have submitted a
patch to Bugzilla.)
Dr. Roy Chaudhuri
Bioinformatics Research Fellow
Division of Immunity and Infection
University of Birmingham, U.K.
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