[Bioperl-l] indexing whole genbank

Chris Fields cjfields at uiuc.edu
Thu Nov 16 10:31:08 EST 2006


> Hello,
> 
> I wrote to this list before because I wasn´t able to index 
> the whole of genebank. I´ve tried to do it spliting the work 
> by creating small indexes and it has worked perfectly so that 
> seems the way to do it.
> 
> Thanks for your comments,
> Guillermo 

Thanks for the update.  I think that the problem was a full GenBank file is
way too large for flatfile indexing (I think it's around 800 GB unpacked
now).  Nice to know doing it by divisions works.

chris

Christopher Fields
Postdoctoral Researcher - Switzer Lab
Dept. of Biochemistry
University of Illinois Urbana-Champaign 




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