[Bioperl-l] Converting Human GeneID to Mouse GeneID

Jason Stajich jason at bioperl.org
Thu Nov 16 14:45:24 EST 2006


have you tried ensembl's biomart?

http://www.ensembl.org/Multi/martview

you will want the ortholog table.

-jason
On Nov 16, 2006, at 8:26 AM, Paul Cantalupo wrote:

> Hello,
>
> Is there a way with Bioperl (or some other tool - NCBI EUtils?) to  
> convert a
> Human NCBI GeneID to a Mouse GeneID. I have a list of Human  
> GeneID's that I
> need to convert to Mouse GeneIDs so that I can compare them to my  
> Mouse
> microarray data.
>
> Thank you,
>
> Paul
>
> -- 
> Paul Cantalupo
> Research Specialist/Systems Programmer
> 559 Crawford Hall
> Department of Biological Sciences
> University of Pittsburgh
> Pittsburgh, PA 15260
> Work: 412-624-4687
> Fax: 412-624-4759
>
> Ask me about Toastmasters: www.toastmasters.org
> Midday Club Treasurer
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

--
Jason Stajich, PhD
Miller Research Fellow
University of California, Berkeley
lab: 510.642.8441
http://pmb.berkeley.edu/~taylor/people/js.html




More information about the Bioperl-l mailing list