[Bioperl-l] Budle::BioPerl dependency issues
pmiguel at purdue.edu
Sun Nov 19 19:58:42 EST 2006
Sendu Bala wrote:
> gang wu wrote:
>> It turned out that most of the modules of BioPerl were not installed at
>> all. And none of the scripts were installed. I had to download and
>> install bioperl-1.5.2-RC3.tar.gz
>> <http://bioperl.org/DIST/bioperl-1.5.2-RC3.tar.gz> again. A similar
>> problem when installing bioperl-db-1.5.2-RC3.tar.gz. So I manually
>> copied all stuff under Bio folder to the corresponding Perl library
>> folder. Is it Ok to do it in this way?
> It will work, but is hardly good enough from our point of view (you
> shouldn't have to do that).
> Can you tell me exactly what you mean by 'were not installed'? What did
> you do to try and install? How did you determine that installation had
My guess is that he thought that bioperl bundle installed the
dependencies *and* bioperl itself. That was my presumption the first
time I saw it on CPAN.
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