[Bioperl-l] Budle::BioPerl dependency issues
gwu at molbio.mgh.harvard.edu
Mon Nov 20 13:31:34 EST 2006
I think the package was not installed at all. The only thing I saw in
the Bio folder is ANS1 which was another package(I mistakenly thought
it's the only package installed by Bundle-BioPerl 2.1.16). I did not
force install with CPAN. So is it possible that the three typos forbid
bioperl be installed?
Sendu Bala wrote:
> gang wu wrote:
>> It turned out that most of the modules of BioPerl were not installed
>> at all. And none of the scripts were installed. I had to download and
>> install bioperl-1.5.2-RC3.tar.gz
>> <http://bioperl.org/DIST/bioperl-1.5.2-RC3.tar.gz> again. A similar
>> problem when installing bioperl-db-1.5.2-RC3.tar.gz. So I manually
>> copied all stuff under Bio folder to the corresponding Perl library
>> folder. Is it Ok to do it in this way?
> It will work, but is hardly good enough from our point of view (you
> shouldn't have to do that).
> Can you tell me exactly what you mean by 'were not installed'? What
> did you do to try and install? How did you determine that installation
> had failed?
> With CPAN, if you were still getting errors during testing, what were
> those remaining errors, and did you do a forced install to ignore the
> errors? If a forced install didn't actually install anything, what
> message did CPAN give you about that, if any?
> With the manual download, after doing "perl Makefile.PL", what is your
> output of "make install"?
> Thank you,
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