[Bioperl-l] Two BioPerl-1.5.2-RC3 installation issues

Sendu Bala bix at sendu.me.uk
Tue Nov 21 12:31:37 EST 2006

gang wu wrote:
> When installing bioperl-1.5.2RC3, I chose to run the BioDBGFF tests with 
> MySQL database. Below is the warning message.
> ===============================================
> Checking if your kit is complete...
> Warning: the following files are missing in your kit:
>         t/BioDBSeqFeature_mysql.t
> Please inform the author.
> Writing Makefile for Bio
> ===============================================

That should get resolved in RC4.

> Another thins is the installation of Bio-ASN1-EntrezGene-1.09, the 'make 
> test' requires bioperl be preinstalled(Bio::Index::...) while bioperl 
> requires it be preinstalled. Is this a circle reference issue?

Yes it is. You'll have to force install one of them. Again, it should 
get resolved in RC4 (Bio::ASN1::EntrezGene won't be a requirement).

Thank you for your feedback,

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