[Bioperl-l] GO terms not present in Swiss annotation object

Jason Stajich jason at bioperl.org
Tue Nov 21 00:57:54 EST 2006


a specific accession and example code will make it easier for someone  
to reproduce (and debug) your problem.

On Nov 20, 2006, at 4:52 PM, Juan Cristobal Vera wrote:

>
>
> Hi,
>   I'm writing a simple application to extract various fields from  
> swissprot objects and I can't access the GO terms found in  
> "dblink" part of the swiss format flat files.  I'm not a  
> professional programmer and I can't figure out why this is  
> occuring.  All the other "dblink" keys are being  
> generated as far as I can tell (e.g. embl, pfam, etc).  The GO  
> terms are just skipped over and it's driving me crazy.  Not sure if  
> this is a bug or a deliberate strategy I'm unfamiliar with.  I  
> apologize if this is not the correct forum to ask for this sort of  
> help and would ask to be directed to the proper one.
>
>
>
> Juan Cristobal Vera
>
> Graduate Student
>
> Department of Biology
>
> Penn State University
>
> 208 Mueller Laboratory
>
> University Park, PA 16802
>
> (814)863-2957
>
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> Bioperl-l at lists.open-bio.org
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--
Jason Stajich
jason at bioperl.org
http://jason.open-bio.org/




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