[Bioperl-l] Bioperl-ext and Staden Package
cjfields at uiuc.edu
Thu Nov 23 09:12:20 EST 2006
On Nov 23, 2006, at 4:46 AM, Squig at web.de wrote:
> I have a short question concerning bioperl-ext and the io_lib from
> the staden package.
> Are there plans to fix bioperl-ext so it could be used with the
> actual version of io_lib (at the moment 1.10.1)?
This is one of the things tentatively planned but there have been no
volunteers for it.
> Myself has no experience in evoking externally written c - code
> from perl. But I think the changes to the io_lib - api are very
> well documented so a fix shouldn't be to hard for somebody with
> experience in this field. Please correct me if I'm totally wrong.
> Here you find the changes, you have to scroll a little bit down to
> If you think I could give a helping hand, please let me know.
> With kind regards,
Any help would be greatly appreciated! There are tests included with
bioperl-ext which you can add to or modify if needed. You can post
patches for any changed code to bugzilla. Here's a HOWTO:
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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