[Bioperl-l] Performance of Bio::Species
cjfields at uiuc.edu
Sat Nov 25 08:32:43 EST 2006
On Nov 25, 2006, at 6:47 AM, Sendu Bala wrote:
> I think the Tree actually only keeps a ref to its root Node, which
> Nodes in general must keep hard refs to their Descendants. With that
> constraint, I haven't been able to break the deadlock and get these
> things to clean up.
> Hopefully I'm missing something obvious; please look into it.
I'm curious to see if this affects sequence parsing (i.e. SwissProt
DB parsing). Does anyone know? It sounds pretty serious.
Sendu, could you commit a bug report for this? I don't think this
should hold up rel 1.5.2 (it's a dev release) but it would be nice to
get it fixed.
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign
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