[Bioperl-l] Error retrieving sequence from BioSQL

Seth Johnson johnson.biotech at gmail.com
Mon Oct 2 10:21:50 EDT 2006


I'm using MySQL 5.0.19 and Perl v5.8.7 [MSWin32-x86-multi-thread]

On 10/2/06, Chris Fields <cjfields at uiuc.edu> wrote:
>
> Seth,
>
> What version of MySQL and perl are you using?  I'm using MySQL 5.0.18 (but
> am upgrading to 5.0.24 tomorrow) and ActivePerl 5.8.819.
>
> I ran into a few problems with bioperl-db tests which were unrelated the
> ones below, but I'm wondering if it is a difference in MySQL versions.
>
> Christopher Fields
> Postdoctoral Researcher - Switzer Lab
> Dept. of Biochemistry
> University of Illinois Urbana-Champaign
>
> > -----Original Message-----
> > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> > bounces at lists.open-bio.org] On Behalf Of Seth Johnson
> > Sent: Saturday, September 30, 2006 6:35 PM
> > To: Hilmar Lapp
> > Cc: Chris Fields; Bioperl List
> > Subject: Re: [Bioperl-l] Error retrieving sequence from BioSQL
> >
> > Here're complete test details:
> > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
> ...
>
> > FAILED tests 10-12
> >     Failed 3/12 tests, 75.00% okay
> > Failed Test     Stat Wstat Total Fail  Failed  List of Failed
> >
> --------------------------------------------------------------------------
> > -----
> > t\02species.t                 65    2   3.08%  63 65
> > t\03simpleseq.t    1   256    59  106 179.66%  7-59
> > t\04swiss.t                   52   14  26.92%  25 27-34 38-42
> > t\12ontology.t     2   512   738 1471 199.32%  3-738
> > t\16obda.t                    12    3  25.00%  10-12
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at lists.open-bio.org
> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
>
>


-- 
Best Regards,


Seth Johnson
Senior Bioinformatics Associate

Ph: (202) 470-0900
Fx: (775) 251-0358


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