[Bioperl-l] Blast parser.

JK (Jesper Agerbo Krogh) JK at novozymes.com
Mon Oct 2 10:05:34 EDT 2006


Hi. 

I've tried to use the blast-parser but I cannot get the original alignment
out of the parser. Is it possible to get that out of the 
Bio::Search::HSP::BlastHSP in some way. It seems quite odd to get a
clustalw alignment out when it isn't that type of alignment people are
used to get from blast. 

Thanks 

Jesper



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