[Bioperl-l] Bioperl 1.5.2 RC1

Chris Fields cjfields at uiuc.edu
Tue Oct 3 08:33:37 EDT 2006


Florin,

Looks like this is fixed and should be working in the next release.

Chris

On Oct 3, 2006, at 6:39 AM, Florin Iucha wrote:

> On Mon, Oct 02, 2006 at 10:54:29PM -0500, Chris Fields wrote:
>>> Otherwise:
>>>
>>>   Failed 1/239 test scripts, 99.58% okay. 1/11864 subtests failed,
>>> 99.99% okay.
>>>
>>> The failed test is:
>>>
>>>   t/ESEfinder..................dubious
>>>      Test returned status 255 (wstat 65280, 0xff00)
>>>   DIED. FAILED test 15
>
> $ perl -I. -w t/ESEfinder.t
> 1..15
> ok 1 - use Bio::Tools::Analysis::DNA::ESEfinder;
> ok 2 - use Data::Dumper;
> ok 3 - use Bio::PrimarySeq;
> ok 4 - use Bio::Seq;
> ok 5
> ok 6 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 7 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 8 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 9 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 10 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 11 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 12 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 13 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> ok 14 # skip Skipping tests which require remote servers, set  
> BIOPERLDEBUG=1 to test
> # Looks like you planned 15 tests but only ran 14.
> $ grep Id t/ESEfinder.t
> # $Id: ESEfinder.t,v 1.13.6.2 2006/10/02 23:10:39 sendu Exp $
>
> florin
>
> -- 
> If we wish to count lines of code, we should not regard them as lines
> produced but as lines spent.                       -- Edsger Dijkstra
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Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign





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