[Bioperl-l] genbank mirror

Torsten Seemann torsten.seemann at infotech.monash.edu.au
Tue Oct 3 22:58:03 EDT 2006


> I'm trying to set up a local mirror of a large part of the Genbank database.
> For users to access the local database, I need to create a web-based search
> tool, much like Entrez of NCBI, or SRS of EBI; that can parse the Genbank
> flat files I've downloaded based on a query entered by the user.

Have you coinsidered bioperl-db / BioSQL ?

http://www.bioperl.org/wiki/BioPerl_db
http://lists.open-bio.org/pipermail/biosql-l/

-- 
Dr Torsten Seemann               http://www.vicbioinformatics.com
Victorian Bioinformatics Consortium, Monash University, Australia



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